Methods in Experimental Ecology II

Topic
PDFs
Scripts & Data

Exercises

Class Presentation

pdf Syllabus (Fall 2016))

pdf Schedule V2

pdf Schedule V3

pdf Instructions (Fall 2016)

Assumptions pdf Assumptions demo RlogoAssumptions script

Hypericum data

pdf Exercise 1

RlogoEX1 script

Averages
pdf Averages demo RlogoAverages script

RlogoModel 1

RlogoModel 2

Hypericum pop data

Hypericum data

 

pdf Exercise 2

 

Logistic Regression pdf Log. reg. demo RlogoLog. reg. script

Hypericum survival data

pdf Exercise 3

RlogoEX3 script

RlogoEX3 answers

Non-Linear pdf Non-linear

pdf Ellison2004

pdf Morris 2015

RlogoWire grass script

Rlogowg priors

wg data

wg prior data

pdf Exercise 4

 

Count Data pdf Count data demo

pdfO’Hanlon et al. 2014

RlogoMantis script

Rlogo Mantis – Poisson

Rlogo Mantis – negbinom

Mantis data

pdf Exercise 5

RlogoEX5 script

Linear Mixed Models
pdf Mixed Models demo

RlogoLinear mixed model

RlogoLMM rand. b0

RlogoLMM rand. b0 & b1

Hypericum data

pdf Exercise 6

RlogoEX6 script

Linear Mixed Model Selection
pdf Mixed Model selection demo

RlogoMMS script

Hypericum data

Bayesian model

Bayesian vs. frequentist

pdf Exercise 7

Generalized Linear Mixed Models

pdf GLMM demo

pdf Wasserstein & Lazar 2016

pdf Nuzzo 2014

RlogoGLMM script

RlogoGLMM w Bayesian

Bayesian model

Hypericum data

Bayesian vs. frequentist

pdf Exercise 8
Zero-Inflated Models

pdf Zero-Inflated models demo

pdfMartin et al. 2005

RlogoZero-inflated script

Fish data

pdf Exercise 9

RlogoEX9 script

Non-linear Counts
pdf Non-Linear Counts demo

RlogoNon-Linear Counts script

Macroinvertebrate data

pdf Exercise 10

Categorical Data
pdf Categorical Data demo
RlogoCategorical Data script

Categorical Data

Final Exam
pdf Exam 2
Exam 2 data

Return date:

April 29, 2016 @ 10:30 AM

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