{"id":551,"date":"2017-01-19T14:56:34","date_gmt":"2017-01-19T19:56:34","guid":{"rendered":"https:\/\/sciences.ucf.edu\/biology\/d4lab\/?page_id=551"},"modified":"2023-11-17T10:09:18","modified_gmt":"2023-11-17T15:09:18","slug":"methods-1","status":"publish","type":"page","link":"https:\/\/sciences.ucf.edu\/biology\/d4lab\/methods-1\/","title":{"rendered":"Methods 1"},"content":{"rendered":"<h2 style=\"text-align: center\">Methods in Experimental Ecology I (PCB 6466): Fall 2023<\/h2>\n<div class=\"title-head\"><span style=\"text-decoration: underline\">Course Information<\/span><\/div>\n<ul>\n<li><strong>Time:<\/strong> Tuesdays &amp; Thursdays\u00a0 (2:00-3:20)<\/li>\n<li><strong>Room:<\/strong> Bio 305<\/li>\n<li><strong>Instructor:<\/strong> Dave Jenkins, office = BIO 111B, email [david.jenkins AT ucf.edu] for help \/ meetings<\/li>\n<li><strong>TA:<\/strong> Ashley Reaume office = 133, email [ashley.reaume AT ucf.edu] for help \/ meetings<\/li>\n<li>A resource: <span style=\"color: #000080\"><span lang=\"zxx\"><span style=\"color: #000000\">Hector, A (2021<\/span><\/span><\/span><span style=\"color: #000080\"><span lang=\"zxx\"><span style=\"color: #000000\">) The new statistics with R \u2013 an int<\/span><\/span><\/span><span style=\"color: #000080\"><span lang=\"zxx\"><span style=\"color: #000000\">r<\/span><\/span><\/span><span style=\"color: #000080\"><span lang=\"zxx\"><span style=\"color: #000000\">oduction for biologists. Oxford.\u00a0<\/span><\/span><\/span> <span style=\"color: #000080\"><span lang=\"zxx\"><span style=\"color: #000000\"><span style=\"font-family: Times New Roman, serif\"><span style=\"font-size: medium\">(Available <a href=\"https:\/\/doi.org\/10.1093\/oso\/9780198798170.001.0001\">here<\/a> <strong>Free<\/strong> if logged in UCF network)<\/span><\/span><\/span><\/span><\/span><\/li>\n<\/ul>\n<p><span style=\"text-decoration: underline\">Resources<\/span><\/p>\n<ul>\n<li><a href=\"https:\/\/www.youtube.com\/channel\/UCExBFDFe1XbNbto0yYXaxPg\/videos\">Recorded lectures on YouTube<\/a><\/li>\n<li><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2021\/08\/syllabusF21-1.pdf\">Syllabus<\/a><\/li>\n<li><a href=\"https:\/\/mirrors.nics.utk.edu\/cran\/\">install R<\/a><\/li>\n<li><a href=\"https:\/\/www.rstudio.com\/products\/rstudio\/download\/#download\">install RStudio<\/a><\/li>\n<li><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/methods-1\/course-resources\/\">Other Resources<\/a><\/li>\n<\/ul>\n<div class=\"title-head\">Description<\/div>\n<p style=\"text-align: left\">Learn how to design, analyze and interpret experiments and quantitative observations. Introduction to modern statistical software and basic statistical methods needed to collect, organize and interpret data critically. For beginning graduate and senior undergraduate researchers, this course bridges between undergraduate stats and Methods II.<\/p>\n<div>\n<div class=\"title-head\">TENTATIVE SCHEDULE (subject to hurricanes, changes in covid policies, etc.)<\/div>\n<\/div>\n<div><\/div>\n<table style=\"height: 408px;width: 100.309%;background-color: #dedede\">\n<tbody>\n<tr style=\"background-color: #53734a;color: #ffffff;height: 24px\">\n<td style=\"width: 6.65951%;height: 24px;text-align: left\">Week<\/td>\n<td style=\"width: 20.6404%;text-align: center;height: 24px\">Videos etc. <strong>(BEFORE class)<\/strong><\/td>\n<td style=\"width: 23.8537%;text-align: center;height: 24px\">Reading <strong>(BEFORE class)<\/strong><\/td>\n<td style=\"width: 26.408%;text-align: center;height: 24px\">In-Class Topics<\/td>\n<td style=\"width: 22.7488%;text-align: center;height: 24px\">Assignments<\/td>\n<\/tr>\n<tr style=\"height: 24px\">\n<td style=\"width: 6.65951%;text-align: center;height: 24px\">1:<\/p>\n<p>Aug 22, 24<\/td>\n<td style=\"width: 20.6404%;height: 24px;text-align: left\"><a href=\"https:\/\/www.youtube.com\/watch?v=d-u_7vdag-0\"><span style=\"color: #000080\"><span lang=\"zxx\"><u>Installing R &amp; RStudio<\/u><\/span><\/span><\/a><\/p>\n<p><a href=\"https:\/\/www.youtube.com\/watch?v=bvKv03VG5Pw\">RStudio Orientation<\/a><\/p>\n<p><a href=\"http:\/\/swirlstats.com\/\">swirlstats.com<\/a><\/p>\n<p><a href=\"https:\/\/datacarpentry.org\/lessons\/\">data carpentry<\/a><\/p>\n<p><a href=\"https:\/\/r-coder.com\/plot-r\/\"><span style=\"color: #000080\"><span lang=\"zxx\"><u>Plot: generic X-Y Plotting<\/u><\/span><\/span><\/a><\/td>\n<td style=\"width: 23.8537%;height: 24px;text-align: left\">&nbsp;<\/p>\n<p><a href=\"http:\/\/www.nature.com\/news\/scientific-method-statistical-errors-1.14700\"><span style=\"color: #000080\"><span lang=\"zxx\"><u>Much ado about <\/u><\/span><\/span><span style=\"color: #000080\"><span lang=\"zxx\"><u><i>p<\/i><\/u><\/span><\/span><\/a><\/p>\n<p><a href=\"http:\/\/www.nature.com\/news\/statistics-p-values-are-just-the-tip-of-the-iceberg-1.17412\"><span style=\"color: #000080\"><span lang=\"zxx\"><u>But stats are &gt; <\/u><\/span><\/span><span style=\"color: #000080\"><span lang=\"zxx\"><u><i>p<\/i><\/u><\/span><\/span><\/a><\/p>\n<p><span style=\"color: #000080\"><span lang=\"zxx\"><span style=\"color: #000000\">\u00a0<\/span><\/span><\/span><\/td>\n<td style=\"width: 26.408%;text-align: center;height: 24px\">\n<p style=\"text-align: left\"><span style=\"color: #000000\">Course overview &amp; goals<\/span><\/p>\n<p style=\"text-align: left\"><a href=\"http:\/\/r4stats.com\/articles\/popularity\/\">Popularity of stats software<\/a><\/p>\n<p style=\"text-align: left\"><span style=\"color: #000000\"><span lang=\"zxx\"><a href=\"https:\/\/www.infoworld.com\/article\/3694611\/8-chatgpt-tools-for-r-programming.html\">AI &amp; R<\/a><br \/>\n<\/span><\/span><\/p>\n<p style=\"text-align: left\"><a href=\"https:\/\/docs.google.com\/document\/d\/1kgmqdNNIQyXCPrbTYwFAoVRgwrur7e1B6BhCSGk34h8\/edit\"><span style=\"color: #000080\"><span lang=\"zxx\"><u>Intro to R &amp; RStudio<\/u><\/span><\/span><\/a><\/p>\n<\/td>\n<td style=\"width: 22.7488%;text-align: center;height: 24px\">\n<ol>\n<li class=\"western\" style=\"text-align: left\"><span style=\"color: #000000\">Install R &amp; RStudio.<\/span><\/li>\n<li class=\"western\" style=\"text-align: left\"><span style=\"color: #000000\">Make a plot in R.\u00a0Any plot.<\/span><\/li>\n<li class=\"western\" style=\"text-align: left\"><span style=\"color: #000000\">Email it to Ashley<\/span><\/li>\n<\/ol>\n<\/td>\n<\/tr>\n<tr style=\"height: 24px\">\n<td style=\"width: 6.65951%;text-align: center;height: 24px\">2:<\/p>\n<p>Aug 29<\/p>\n<p><strong>F&#8217;BALL AUG 31<\/strong><\/td>\n<td style=\"width: 20.6404%;height: 24px;text-align: left\"><\/td>\n<td style=\"width: 23.8537%;height: 24px;text-align: left\"><span style=\"color: #000080\"><span lang=\"zxx\"><span style=\"color: #000000\">Hypotheses <\/span><\/span><\/span><a href=\"http:\/\/en.wikipedia.org\/wiki\/Hypothesis\"><span style=\"color: #000080\"><span lang=\"zxx\"><u>1<\/u><\/span><\/span><\/a><span style=\"color: #000080\"><span lang=\"zxx\"> , <a href=\"https:\/\/statisticalsage.wordpress.com\/2011\/09\/21\/difficult-concepts-research-hypotheses-vs-statistical-hypotheses\/\">2<\/a><\/span><\/span><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2017\/01\/Chamberlin1890.pdf\">Chamberlin (1890)<\/a><\/p>\n<p><span style=\"color: #000080\"><span lang=\"zxx\"><u><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2017\/01\/McGill-etal-2006-excerpt.pdf\">McGill et al. (2006) excerpt<\/a><\/u><\/span><\/span><\/p>\n<p><a href=\"https:\/\/dynamicecology.wordpress.com\/2016\/06\/01\/obstacles-to-strong-inference-in-ecology\/\"><span style=\"color: #000080\"><span lang=\"zxx\"><u>Ecology &amp; strong inference<\/u><\/span><\/span><\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2018\/08\/Chaves2010.pdf\">Chaves (2010)<\/a><\/p>\n<p><a href=\"https:\/\/www.nature.com\/articles\/s41567-019-0489-5\">Buchanan (2019)<\/a><\/td>\n<td style=\"width: 26.408%;height: 24px;text-align: center\">\n<p style=\"text-align: left\">Readings discussion<\/p>\n<\/td>\n<td style=\"width: 22.7488%;text-align: center;height: 24px\"><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2023\/08\/hw1-F23.pdf\">Homework #1<\/a><\/p>\n<p>(<strong>Due 5 Sep<\/strong>)<\/td>\n<\/tr>\n<tr style=\"height: 24px\">\n<td style=\"width: 6.65951%;text-align: center;height: 24px\">3:<\/p>\n<p>Sep 5, 7<\/td>\n<td style=\"width: 20.6404%;height: 24px;text-align: left\"><a href=\"https:\/\/www.youtube.com\/watch?v=eFXU-p7Zc1c\"><span lang=\"zxx\">Data <\/span><span lang=\"zxx\">basics<\/span><\/a><\/p>\n<p><a href=\"https:\/\/www.youtube.com\/watch?v=idsl3BNCHNE\"><span lang=\"zxx\">Handling data<\/span><\/a><\/p>\n<p><a href=\"https:\/\/www.youtube.com\/watch?v=jWjqLW-u3hc\"><span lang=\"zxx\"><u>dplyr lesson <\/u><\/span><span lang=\"zxx\"><u>1<\/u><\/span><\/a><\/p>\n<p><a href=\"https:\/\/www.youtube.com\/watch?v=2mh1PqfsXVI&amp;t=4s\"><span lang=\"zxx\"><u>dplyr lesson 2<\/u><\/span><\/a><\/p>\n<p><a href=\"https:\/\/www.youtube.com\/watch?v=f7yC36L6qU4\">Experimental\u00a0Designs 1<\/a><\/p>\n<p><a href=\"https:\/\/www.youtube.com\/watch?v=HAytQLbi23Q\">Experimental Designs 2<\/a><\/td>\n<td style=\"width: 23.8537%;height: 24px;text-align: left\"><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2022\/09\/smorgasbord-v2.pdf\">Many Choices<\/a><\/p>\n<p><a href=\"http:\/\/www.paperhelicopterexperiment.com\/\"><span style=\"color: #000080\"><span lang=\"zxx\"><u>Helicopter experiment<\/u><\/span><\/span><\/a><\/p>\n<p>&nbsp;<\/td>\n<td style=\"width: 26.408%;height: 24px;text-align: left\"><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2023\/09\/handling-data.pdf\">Handling Data #1<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2021\/09\/playing-with-copter-data.txt\">Handling Data #2<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2021\/09\/helicopter-data.csv\">helicopter data.csv<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2021\/09\/helicopter-data-1.xls\">helicopter data.xls<\/a><\/td>\n<td style=\"width: 22.7488%;text-align: center;height: 24px\">\n<p class=\"western\"><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2023\/09\/homework-2.pdf\">Homework #2<\/a><\/p>\n<p class=\"western\">(<strong>Due 12 Sep<\/strong>)<\/p>\n<\/td>\n<\/tr>\n<tr style=\"height: 24px\">\n<td style=\"width: 6.65951%;text-align: center;height: 24px\">4:<\/p>\n<p>Sep 12, 14<\/td>\n<td style=\"width: 20.6404%;height: 24px;text-align: left\"><a href=\"https:\/\/www.youtube.com\/watch?v=ePD96i0YHII&amp;t=58s\"><span id=\"eow-title\" class=\"watch-title\" dir=\"ltr\" title=\"How To Graph in RStudio: The Basics\">How To Graph in RStudio: The Basics<\/span><\/a><\/p>\n<p>ggplot 2 <a href=\"https:\/\/www.youtube.com\/watch?v=HeqHMM4ziXA&amp;t=86s\">Lecture 1<\/a> &amp;<a href=\"https:\/\/www.youtube.com\/watch?v=n8kYa9vu1l8\"> Lecture 2<\/a><\/p>\n<p>Graphing in R ggplot2 <a href=\"https:\/\/www.youtube.com\/watch?v=WxSUsTDcMTg&amp;t=89s\">#1<\/a> &amp; <a href=\"https:\/\/www.youtube.com\/watch?v=OYxJsUgSLFs\">#2<\/a><\/td>\n<td style=\"width: 23.8537%;height: 24px;text-align: left\"><a href=\"http:\/\/motioninsocial.com\/tufte\/\">Tufte in R<\/a><\/p>\n<p><a href=\"http:\/\/flowingdata.com\/2012\/12\/17\/getting-started-with-charts-in-r\/\"><span lang=\"zxx\">Getting Started with Ch<\/span><span lang=\"zxx\">arts in R<\/span><\/a><\/p>\n<p><a href=\"https:\/\/www.learnbyexample.org\/r-plot-function\/\"><span lang=\"zxx\">Plot: generic X-Y Plotting<\/span><\/a><\/p>\n<p><a href=\"https:\/\/www.rstudio.com\/resources\/cheatsheets\/\"><span lang=\"zxx\">R<\/span> cheat sheets (!)<\/a> including <a href=\"https:\/\/github.com\/rstudio\/cheatsheets\/raw\/master\/data-visualization.pdf\">ggplot<\/a><\/p>\n<p><a href=\"https:\/\/www.statmethods.net\/advgraphs\/trellis.html\"><span lang=\"zxx\">lattice<\/span><\/a><\/td>\n<td style=\"width: 26.408%;height: 24px;text-align: left\">\n<p class=\"western\"><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2023\/09\/Graphing-I.txt\">Graphing I (as.txt)<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2022\/09\/Graphing-II.txt\">Graphing II (as .txt)<\/a><\/td>\n<td style=\"width: 22.7488%;text-align: center;height: 24px\">\n<p class=\"western\"><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2023\/09\/hw3-to-post-3.pdf\">Homework #3<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2018\/09\/SilwoodWeather.txt\">Silwood weather data (.txt)<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2023\/09\/SilwoodWeather.csv\">Silwood weather data (.csv)<\/a><\/p>\n<p>(<strong>Due 19 Sep<\/strong>)<\/td>\n<\/tr>\n<tr style=\"height: 24px\">\n<td style=\"width: 6.65951%;text-align: center;height: 24px\">5:<\/p>\n<p>Sep 19, 21<\/td>\n<td style=\"width: 20.6404%;height: 24px\"><a href=\"https:\/\/www.youtube.com\/watch?v=K2ssDgi64Ps\">Probabilities<\/a><\/p>\n<p><a href=\"https:\/\/www.youtube.com\/watch?v=nULmifJ3mUY\">Distributions<\/a><\/td>\n<td style=\"width: 23.8537%;height: 24px\"><a href=\"https:\/\/www.r-bloggers.com\/normality-and-testing-for-normality\/\">Normality tests I<\/a><\/p>\n<p><a href=\"https:\/\/stackoverflow.com\/questions\/7781798\/seeing-if-data-is-normally-distributed-in-r\/\">Normality tests II<\/a><\/p>\n<p><a href=\"http:\/\/www.cookbook-r.com\/Statistical_analysis\/Homogeneity_of_variance\/\">Homogeneity tests<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2017\/01\/OHaraKotze2010.pdf\">Do not log-transform count data<\/a><\/td>\n<td style=\"width: 26.408%;height: 24px\"><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2021\/09\/normalityvariance.txt\">Normality &amp; Variance<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2021\/09\/transforming-F21.txt\">Transforming Data (new)<\/a><\/td>\n<td style=\"width: 22.7488%;text-align: center;height: 24px\">\n<p class=\"western\"><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2023\/09\/homework-4-F23.pdf\">Homework #4<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2017\/01\/speciespH.txt\">species pH data<\/a><\/p>\n<p><strong>(Due 26 Sep)<\/strong><\/td>\n<\/tr>\n<tr style=\"height: 24px\">\n<td style=\"width: 6.65951%;text-align: center;height: 24px\">6:<\/p>\n<p>Sep 26, 28<\/td>\n<td style=\"width: 20.6404%;height: 24px\"><a href=\"https:\/\/www.youtube.com\/watch?v=VrL1D-0fVC8\">Z- and t-tests<\/a><\/p>\n<p><a href=\"https:\/\/www.youtube.com\/watch?v=WPAtLyVEG0o\">ANOVAs I &amp; II<\/a><\/p>\n<p><a href=\"https:\/\/www.youtube.com\/watch?v=QNRXOAqFqvY\">OLS Regressions<\/a><\/td>\n<td style=\"width: 23.8537%;height: 24px\">\n<p class=\"western\"><span lang=\"zxx\">\u00a0<\/span><\/p>\n<\/td>\n<td style=\"width: 26.408%;height: 24px\"><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2021\/09\/t-tests-1.txt\">t tests<\/a><\/p>\n<p style=\"text-align: left\"><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2017\/01\/ncbirths.txt\">NC births data<\/a><\/p>\n<p class=\"western\"><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2022\/09\/Copter-Analyses-I-1.txt\">Copter Analyses I<\/a><\/p>\n<\/td>\n<td style=\"width: 22.7488%;text-align: center;height: 24px\">\n<p class=\"western\"><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2023\/09\/homework5-to-post-1.pdf\">Homework #5<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2017\/01\/zinc.txt\">zinc data<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2017\/01\/barley.txt\">barley data<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2017\/01\/possum.txt\">possum data<\/a><\/p>\n<p><strong>(Due 3 Oct)<\/strong><\/td>\n<\/tr>\n<tr style=\"height: 24px\">\n<td style=\"width: 6.65951%;text-align: center;height: 24px\">7:<\/p>\n<p>Oct 3, 5<\/td>\n<td style=\"width: 20.6404%;height: 24px\"><a href=\"https:\/\/www.youtube.com\/watch?v=7XAHjm6Vy5k\">Model selection (w\/ AIC)<\/a><\/td>\n<td style=\"width: 23.8537%;height: 24px\"><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2017\/01\/Anderson-et-al.-2000.pdf\">Anderson et al. (2000)<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2017\/01\/Anderson-Burnham-2002.pdf\">Anderson &amp; Burnham (2002)<\/a><\/td>\n<td style=\"width: 26.408%;height: 24px\">Readings discussion<\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2021\/10\/copter-ANOVAs-II.txt\">Copter Analyses II<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2021\/10\/Using-AICc-1.pdf\">Using AIC (new! improved!)<\/a><\/td>\n<td style=\"width: 22.7488%;text-align: center;height: 24px\">\n<p class=\"western\"><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2023\/10\/hw6-to-post.pdf\">Homework #6<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2022\/10\/MLBbattingdata2022.csv\">MLBbattingdata2022<\/a><\/p>\n<p class=\"western\"><strong><span style=\"color: #000000\">(Due 10 Oct)<\/span><\/strong><\/p>\n<\/td>\n<\/tr>\n<tr style=\"height: 24px\">\n<td style=\"width: 6.65951%;text-align: center;height: 24px\">8:<\/p>\n<p>Oct 10, 12<\/td>\n<td style=\"width: 20.6404%;height: 24px\">\n<p class=\"western\"><a href=\"https:\/\/www.youtube.com\/watch?v=wMsV6pNPOQQ\">Representing statistical variation<\/a><\/p>\n<\/td>\n<td style=\"width: 23.8537%;height: 24px\"><a href=\"https:\/\/journals.plos.org\/plosone\/article\/file?id=10.1371\/journal.pone.0229345&amp;type=printable\">Min. N for regressions<\/a><\/p>\n<p><a href=\"https:\/\/academic.oup.com\/beheco\/article\/14\/3\/446\/257432\/Confidence-intervals-are-a-more-useful-complement\">CIs, not posthoc power!<\/a><\/td>\n<td style=\"width: 26.408%;height: 24px\">\n<p class=\"western\"><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2021\/10\/CIs.pdf\">CIs<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2018\/10\/CIs.R.txt\">CIs.R.txt<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2019\/10\/Power-analysis.pdf\">Power analysis<\/a><\/td>\n<td style=\"width: 22.7488%;text-align: center;height: 24px\">\n<p class=\"western\"><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2023\/10\/hw7-for-students.pdf\">Homework #7<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2017\/01\/chickwts.txt\">chickwts<\/a> <a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2017\/01\/ipomopsis.txt\">ipomopsis<\/a><\/p>\n<p class=\"western\"><strong><span style=\"color: #000000\">(Due 17 Oct)<\/span><\/strong><\/p>\n<\/td>\n<\/tr>\n<tr style=\"height: 24px\">\n<td style=\"width: 6.65951%;text-align: center;height: 24px\">9:<\/p>\n<p>Oct 17, 19<\/p>\n<p>&nbsp;<\/td>\n<td style=\"width: 20.6404%;height: 24px\"><a href=\"https:\/\/www.youtube.com\/watch?v=dvXEcYYnask\">SMA Regressions<\/a><\/p>\n<p><a href=\"https:\/\/www.youtube.com\/watch?v=tYzX7QGvREI\">ANCOVAs<\/a><\/td>\n<td style=\"width: 23.8537%;height: 24px\"><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2017\/01\/Warton-etal-2012.pdf\">Warton et al. (2012)<\/a><\/td>\n<td style=\"width: 26.408%;height: 24px\"><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2022\/10\/linear-sma-regressions.pdf\">Linear &amp; SMA Regressions<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2021\/10\/ANCOVAs.pdf\">ANCOVAs<\/a><\/p>\n<p style=\"text-align: left\"><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2017\/01\/tancat.txt\">tancat<\/a> \u00a0 <a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2017\/01\/FLHg.txt\">FLHg<\/a><\/p>\n<\/td>\n<td style=\"width: 22.7488%;text-align: center;height: 24px\">\n<p class=\"western\"><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2023\/10\/homework8-to-post.pdf\">Homework #8<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2017\/01\/fishery.txt\">fishery<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2022\/10\/zebrafish.csv\">zebrafish<\/a><\/p>\n<p class=\"western\"><strong><span style=\"color: #000000\">(Due 24 Oct)<\/span><\/strong><\/p>\n<\/td>\n<\/tr>\n<tr style=\"height: 24px\">\n<td style=\"width: 6.65951%;text-align: center;height: 24px\">10:<\/p>\n<p>Oct 24, 26<\/td>\n<td style=\"width: 20.6404%;height: 24px\"><a href=\"https:\/\/www.youtube.com\/watch?v=4SG2CB2Yu1c\">Multiple Regressions<\/a><\/td>\n<td style=\"width: 23.8537%;height: 24px\"><\/td>\n<td style=\"width: 26.408%;height: 24px\"><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2018\/10\/mult-regressions-F18.pdf\">Multiple Regressions I<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2022\/10\/mult-regressions-2.pdf\">Multiple Regressions II<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2022\/10\/streams.csv\">streams.csv<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2021\/10\/regression-outputs-residuals-demo.txt\">Regression Outputs &amp; Residuals<\/a><\/td>\n<td style=\"width: 22.7488%;text-align: center;height: 24px\">\n<p class=\"western\"><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2023\/10\/hw9-to-post.pdf\">Homework #9<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2017\/01\/timber2.txt\">timber2.txt<\/a><\/p>\n<p class=\"western\"><strong><span style=\"color: #000000\">(Due 31 Oct)<\/span><\/strong><\/p>\n<\/td>\n<\/tr>\n<tr style=\"height: 24px\">\n<td style=\"width: 6.65951%;text-align: center;height: 24px\">11:<\/p>\n<p>Oct 31, Nov 2<\/td>\n<td style=\"width: 20.6404%;height: 24px\"><a href=\"https:\/\/www.youtube.com\/watch?v=G5xIFdLL5Ic\">Generalized Linear Models I<\/a><\/p>\n<p><a href=\"https:\/\/www.youtube.com\/watch?v=LaVyUoTqM90\">Generalized Linear Models II<\/a><\/td>\n<td style=\"width: 23.8537%;height: 24px\"><\/td>\n<td style=\"width: 26.408%;height: 24px\"><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2022\/10\/glms-v2.R-1.txt\">GLMs I<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2021\/11\/beetlemeans.csv\">beetlemeans.csv<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2022\/10\/GLMs-II-1.pdf\">GLMs II (&amp; CART)<\/a><\/p>\n<p style=\"text-align: left\"><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2017\/11\/ozonedata.txt\">ozone data<\/a><\/p>\n<\/td>\n<td style=\"width: 22.7488%;text-align: center;height: 24px\">\n<p class=\"western\"><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2023\/11\/hw10-to-post.pdf\">Homework #10<\/a><\/p>\n<p>&nbsp;<\/p>\n<p><strong>(Due 7 Nov)<\/strong><\/td>\n<\/tr>\n<tr style=\"height: 24px\">\n<td style=\"width: 6.65951%;text-align: center;height: 24px\">12:<\/p>\n<p>Nov 7, 9<\/p>\n<p>&nbsp;<\/td>\n<td style=\"width: 20.6404%;height: 24px\">\n<p class=\"western\"><a href=\"https:\/\/www.youtube.com\/watch?v=-4K-kKXNths\">Intro to Mixed Effects Models<\/a><\/p>\n<\/td>\n<td style=\"width: 23.8537%;height: 24px\">\n<p class=\"western\">\n<\/td>\n<td style=\"width: 26.408%;height: 24px\"><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2021\/11\/mixed-effect-anovas.pdf\">Mixed Effect ANOVAs<\/a><\/p>\n<p style=\"text-align: left\"><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2017\/01\/plantdata0615.txt\">plantdata0615<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2021\/11\/mixed-effect-anovas-II.pdf\">Mixed Effect ANOVAs II<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2021\/11\/beetlesdata.csv\">beetlesdata.csv<\/a><\/td>\n<td style=\"width: 22.7488%;text-align: center;height: 24px\">\n<p class=\"western\"><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2023\/11\/homework-11-to-post-1.pdf\">Homework #11<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2017\/01\/carrots.txt\">carrots<\/a><\/p>\n<p class=\"western\"><span style=\"color: #000000\"><strong>(Due 14 Nov)<\/strong><\/span><\/p>\n<\/td>\n<\/tr>\n<tr style=\"height: 24px\">\n<td style=\"width: 6.65951%;text-align: center;height: 24px\">13:<\/p>\n<p>Nov 14, 16<\/td>\n<td style=\"width: 20.6404%;height: 24px\"><strong>\u00a0<\/strong><\/p>\n<p><a href=\"https:\/\/www.youtube.com\/watch?v=zUxZ95IXTco\">Logistic Regressions<\/a><\/p>\n<p>&nbsp;<\/td>\n<td style=\"width: 23.8537%;height: 24px\"><\/td>\n<td style=\"width: 26.408%;height: 24px\"><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2021\/11\/Plotting.txt\">Plotting complex models<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2021\/11\/GLMMs-II.pdf\">Mixed Effects Regressions<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2021\/11\/Seals.txt\">Seals data<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2018\/11\/logistic-regression.pdf\">Logistic Regressions<\/a><\/p>\n<p style=\"text-align: left\"><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2017\/01\/islandbird.txt\">islandbird<\/a><\/p>\n<\/td>\n<td style=\"width: 22.7488%;text-align: center;height: 24px\">\n<p class=\"western\"><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2023\/11\/homework-12.pdf\">Homework #12<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2018\/11\/parasites.txt\">parasites<\/a><\/p>\n<h2 class=\"western\"><strong><span style=\"color: #000000\">(Due <span style=\"text-decoration: underline\">28<\/span> Nov)<\/span><\/strong><\/h2>\n<\/td>\n<\/tr>\n<tr style=\"height: 24px\">\n<td style=\"width: 6.65951%;text-align: center;height: 24px\">14:<\/p>\n<p>Nov 21<\/p>\n<p><b>T&#8217;GIVING<\/b><\/td>\n<td style=\"width: 20.6404%;height: 24px\"><a href=\"https:\/\/youtu.be\/iHcXD9HuNzU\">Intro to Multivariate Analyses<\/a><\/td>\n<td style=\"width: 23.8537%;height: 24px;text-align: center\">\n<p style=\"text-align: left\"><a href=\"https:\/\/ordination.okstate.edu\/\">Ordinations<\/a><\/p>\n<p style=\"text-align: left\"><a href=\"https:\/\/jonlefcheck.net\/2012\/10\/24\/nmds-tutorial-in-r\/\">NMDS in R<\/a><\/p>\n<\/td>\n<td style=\"width: 26.408%;height: 24px\"><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2021\/11\/ordinations.R.txt\">ordinations.R (as txt)<\/a><\/p>\n<p style=\"text-align: left\"><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2018\/11\/diplo2017.txt\">diplo2017<\/a><\/p>\n<p><a href=\"https:\/\/doi.org\/10.25849\/myrmecol.news_027:047\">Ohyama et al. (2018)<\/a><\/td>\n<td style=\"width: 22.7488%;text-align: center;height: 24px\"><b>&#8211; &#8211; &#8211; &#8211;<\/b><\/td>\n<\/tr>\n<tr style=\"height: 24px\">\n<td style=\"width: 6.65951%;text-align: center;height: 24px\">15:<\/p>\n<p>Nov 28, 30<\/td>\n<td style=\"width: 20.6404%;height: 24px\">\n<p class=\"western\" style=\"text-align: center\"><b>&#8211; &#8211; &#8211; &#8211;<\/b><\/p>\n<\/td>\n<td style=\"width: 23.8537%;height: 24px;text-align: center\"><b>&#8211; &#8211; &#8211; &#8211;<\/b><\/td>\n<td style=\"width: 26.408%;height: 24px\"><span style=\"color: #000000\"><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2022\/11\/practice-1-1.pdf\">practice 1<\/a><\/span><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2022\/12\/practice1codeF22.R.txt\">Dave&#8217;s attempt (txt)<\/a><\/p>\n<p style=\"text-align: left\"><span style=\"color: #000000\"><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2019\/12\/sulphur.dioxide.txt\">sulphur dioxide data (txt)<\/a><\/span><\/p>\n<p style=\"text-align: left\"><span style=\"color: #000000\"><b>Final Exam to You Nov 30<br \/>\n<\/b><\/span><\/p>\n<\/td>\n<td style=\"width: 22.7488%;text-align: center;height: 24px\">final exam<\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2022\/12\/censusdata.txt\">corrected censusdata.txt<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2022\/12\/FLBearHunt.csv\">FLBearHunt.csv<\/a><\/p>\n<p><a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/wp-content\/uploads\/sites\/23\/2021\/12\/asparagus.txt\">asparagus.txt<\/a><\/td>\n<\/tr>\n<tr style=\"height: 24px\">\n<td style=\"width: 6.65951%;text-align: center;height: 24px\">16:<\/p>\n<p>Dec 5, 7<\/td>\n<td style=\"width: 20.6404%;text-align: center;height: 24px\">\n<p class=\"western\"><b>Finals Week<\/b><\/p>\n<\/td>\n<td style=\"width: 23.8537%;text-align: center;height: 24px\"><b>Finals Week<\/b><\/td>\n<td style=\"width: 26.408%;text-align: center;height: 24px\">\u00a0<b>Finals Week<\/b><\/td>\n<td style=\"width: 22.7488%;text-align: center;height: 24px\">\n<p class=\"western\"><b>Final<span style=\"text-decoration: underline\"> DUE THURS DEC 7<\/span><br \/>\n<\/b><\/p>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<div><\/div>\n","protected":false},"excerpt":{"rendered":"<p>Methods in Experimental Ecology I (PCB 6466): Fall 2023 Course Information Time: Tuesdays &amp; Thursdays\u00a0 (2:00-3:20) Room: Bio 305 Instructor: Dave Jenkins, office = BIO 111B, email [david.jenkins AT ucf.edu] for help \/ meetings TA: Ashley Reaume office = 133, &hellip; <a href=\"https:\/\/sciences.ucf.edu\/biology\/d4lab\/methods-1\/\">Continue reading <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":30,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"templates\/template-full-notitle.php","meta":{"footnotes":""},"class_list":["post-551","page","type-page","status-publish","hentry"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v27.2 - 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