{"id":157,"date":"2016-11-07T14:02:52","date_gmt":"2016-11-07T19:02:52","guid":{"rendered":"https:\/\/sciences.ucf.edu\/biology\/pascencio\/?page_id=157"},"modified":"2017-01-10T11:36:32","modified_gmt":"2017-01-10T16:36:32","slug":"methods-in-experimental-ecology-ii","status":"publish","type":"page","link":"https:\/\/sciences.ucf.edu\/biology\/pascencio\/methods-in-experimental-ecology-ii\/","title":{"rendered":"Methods in Experimental Ecology II"},"content":{"rendered":"\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
\n
\n
Topic <\/span><\/div>\n<\/div>\n<\/td>\n
\n
\n
PDFs<\/div>\n<\/div>\n<\/td>\n
\n
\n
Scripts & Data<\/div>\n<\/div>\n<\/td>\n
\n
\n

Exercises<\/p>\n<\/div>\n<\/td>\n

<\/td>\n<\/tr>\n
\n
Class Presentation <\/span><\/div>\n<\/td>\n
\n

\"pdf\"<\/a><\/span> Syllabus <\/span><\/span>(Fall 2016)<\/span>)<\/span><\/p>\n

\"pdf\"<\/a><\/span> Schedule V2 <\/span><\/span><\/p>\n

\"pdf\"<\/a><\/span> Schedule V3<\/span><\/span><\/p>\n<\/td>\n

\n
\n

\"Rlogo\"http:\/\/cran.r-project.org\/doc\/manuals\/R-intro.pdf<\/a><\/p>\n<\/div>\n<\/td>\n

\n

\"pdf\"<\/a><\/span> Instructions <\/span><\/span>(Fall 2016)<\/span><\/p>\n<\/td>\n

<\/td>\n<\/tr>\n
Assumptions<\/td>\n\"pdf\"<\/a> Assumptions demo <\/span><\/td>\n\"Rlogo\"<\/a>Assumptions script<\/span><\/p>\n

<\/a>Hypericum data <\/span><\/span><\/td>\n

\"pdf\"<\/a> Exercise 1<\/span><\/p>\n

\"Rlogo\"<\/a>EX1 script<\/span><\/td>\n

<\/td>\n<\/tr>\n
\n
Averages<\/div>\n<\/td>\n
\"pdf\"<\/a> Averages demo <\/span><\/td>\n\"Rlogo\"<\/a>Averages script <\/span><\/p>\n

\"Rlogo\"<\/a>Model 1 <\/span><\/p>\n

\"Rlogo\"<\/a>Model 2<\/span><\/p>\n

<\/a>Hypericum pop data <\/span><\/p>\n

<\/a>Hypericum data<\/span><\/span><\/td>\n

 <\/p>\n

\"pdf\"<\/a> Exercise 2 <\/span><\/p>\n

 <\/td>\n

<\/td>\n<\/tr>\n
Logistic Regression <\/span><\/td>\n\"pdf\"<\/a> Log. reg. demo <\/span><\/td>\n\"Rlogo\"<\/a>Log. reg. script <\/span><\/p>\n

<\/a>Hypericum survival data<\/span><\/span><\/td>\n

\"pdf\"<\/a> Exercise 3 <\/span><\/p>\n

\"Rlogo\"<\/a>EX3 script<\/span><\/p>\n

\"Rlogo\"<\/a>EX3 answers <\/span><\/td>\n

<\/td>\n<\/tr>\n
Non-Linear<\/span><\/td>\n\"pdf\"<\/a> Non-linear <\/span><\/p>\n

\"pdf\"<\/a> Ellison2004 <\/span><\/p>\n

\"pdf\"<\/a> Morris 2015 <\/span><\/td>\n

\n

\"Rlogo\"<\/a>Wire grass script <\/span><\/p>\n

\"Rlogo\"<\/a>wg priors <\/span><\/p>\n

<\/a>wg data <\/span><\/p>\n

<\/a>wg prior data<\/span><\/td>\n

\"pdf\"<\/a> Exercise 4 <\/span><\/p>\n

 <\/td>\n

<\/td>\n<\/tr>\n
Count Data <\/span><\/td>\n\"pdf\"<\/a> Count data demo<\/span><\/p>\n

\"pdf\"<\/a>O’Hanlon et al. 2014 <\/span><\/p>\n<\/td>\n

\"Rlogo\"<\/a>Mantis script <\/span><\/p>\n

\"Rlogo\"<\/a> Mantis – Poisson <\/span><\/p>\n

\"Rlogo\"<\/a> Mantis – negbinom<\/span><\/p>\n

<\/a>Mantis data<\/span><\/span><\/td>\n

\"pdf\"<\/a> Exercise 5 <\/span><\/p>\n

\"Rlogo\"<\/a>EX5 script<\/span><\/td>\n

<\/td>\n<\/tr>\n
\n
Linear Mixed Models <\/span><\/div>\n<\/td>\n
\n
\"pdf\"<\/a> Mixed Models demo<\/span><\/div>\n<\/td>\n
\n
\n

\"Rlogo\"<\/a>Linear mixed model <\/span><\/p>\n

\"Rlogo\"<\/a>LMM rand. b0 <\/span><\/p>\n

\"Rlogo\"<\/a>LMM rand. b0 & b1 <\/span><\/p>\n

<\/a>Hypericum data<\/span><\/p>\n<\/div>\n<\/td>\n

\n

\"pdf\"<\/a> Exercise 6 <\/span><\/p>\n

\"Rlogo\"<\/a>EX6 script<\/span><\/p>\n<\/td>\n

<\/td>\n<\/tr>\n
\n
Linear Mixed Model Selection <\/span><\/div>\n<\/td>\n
\n
\n
\n
\n

\"Rlogo\"<\/a>MMS script <\/span><\/p>\n

<\/a>Hypericum data<\/span><\/p>\n

<\/a>Bayesian model <\/span><\/p>\n

<\/a>Bayesian vs. frequentist <\/span><\/p>\n<\/div>\n<\/td>\n

\n
\n

\"pdf\"<\/a> Exercise 7<\/span><\/p>\n

\n<\/div>\n<\/td>\n

<\/td>\n<\/tr>\n
\n
Generalized Linear Mixed Models <\/span><\/div>\n<\/td>\n
\n
\n
\n

\"Rlogo\"<\/a>GLMM script <\/span><\/p>\n

\"Rlogo\"<\/a>GLMM w Bayesian<\/span><\/p>\n

<\/a>Bayesian model <\/span><\/p>\n

<\/a>Hypericum data<\/span><\/p>\n

<\/a>Bayesian vs. frequentist<\/span><\/p>\n<\/td>\n

\n
\"pdf\"<\/a> Exercise 8 <\/span><\/div>\n<\/td>\n
<\/td>\n<\/tr>\n
\n
Zero-Inflated Models<\/span><\/div>\n<\/td>\n
\n
\n
\n
\n

\"Rlogo\"<\/a>Zero-inflated script <\/span><\/p>\n

<\/a>Fish data<\/span><\/p>\n<\/div>\n<\/td>\n

\n
\n

\"pdf\"<\/a> Exercise 9 <\/span><\/p>\n

\"Rlogo\"<\/a>EX9 script<\/span><\/p>\n

\n<\/div>\n<\/td>\n

<\/td>\n<\/tr>\n
\n
Non-linear Counts <\/span><\/div>\n<\/td>\n
\n
\n
\n
\n

\"Rlogo\"<\/a>Non-Linear Counts script<\/span><\/p>\n

<\/a>Macroinvertebrate data<\/span><\/p>\n<\/div>\n<\/td>\n

\n
\n

\"pdf\"<\/a> Exercise 10 <\/span><\/p>\n<\/div>\n<\/td>\n

<\/td>\n<\/tr>\n
\n
Categorical Data <\/span><\/div>\n<\/td>\n
\n
\n
\"pdf\" Categorical Data demo <\/span><\/div>\n<\/div>\n<\/td>\n
\n
\"Rlogo\"Categorical Data script<\/span><\/div>\n<\/td>\n
\n
\n

Categorical Data<\/span><\/p>\n<\/div>\n<\/td>\n

<\/td>\n<\/tr>\n
\n
Final Exam<\/span><\/div>\n<\/td>\n
\n
\n
\n
<\/a>Exam 2 data<\/span><\/div>\n<\/td>\n
\n
\n

Return date:<\/span><\/p>\n

April 29, 2016 @ 10:30 AM<\/p>\n<\/div>\n<\/td>\n

<\/td>\n<\/tr>\n
Thanks for the opportunity of sharing ideas with you!<\/span><\/td>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n","protected":false},"excerpt":{"rendered":"

Topic PDFs Scripts & Data Exercises Class Presentation Syllabus (Fall 2016)) Schedule V2 Schedule V3 http:\/\/cran.r-project.org\/doc\/manuals\/R-intro.pdf Instructions (Fall 2016) Assumptions Assumptions demo Assumptions script Hypericum data Exercise 1 EX1 script Averages Averages demo Averages script Model 1 Model 2 Hypericum … Continue reading →<\/span><\/a><\/p>\n","protected":false},"author":3,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-157","page","type-page","status-publish","hentry"],"yoast_head":"\nMethods in Experimental Ecology II - Modeling Ecological Dynamics in Anthropogenic and Natural Systems<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/sciences.ucf.edu\/biology\/pascencio\/methods-in-experimental-ecology-ii\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Methods in Experimental Ecology II - Modeling Ecological Dynamics in Anthropogenic and Natural Systems\" \/>\n<meta property=\"og:description\" content=\"Topic PDFs Scripts & Data Exercises Class Presentation Syllabus (Fall 2016)) Schedule V2 Schedule V3 http:\/\/cran.r-project.org\/doc\/manuals\/R-intro.pdf Instructions (Fall 2016) Assumptions Assumptions demo Assumptions script Hypericum data Exercise 1 EX1 script Averages Averages demo Averages script Model 1 Model 2 Hypericum … Continue reading →\" \/>\n<meta property=\"og:url\" content=\"https:\/\/sciences.ucf.edu\/biology\/pascencio\/methods-in-experimental-ecology-ii\/\" \/>\n<meta property=\"og:site_name\" content=\"Modeling Ecological Dynamics in Anthropogenic and Natural Systems\" \/>\n<meta property=\"article:modified_time\" content=\"2017-01-10T16:36:32+00:00\" \/>\n<meta property=\"og:image\" content=\"https:\/\/sciences.ucf.edu\/biology\/pascencio\/wp-content\/uploads\/sites\/2\/sites\/24\/2016\/11\/pdf_logo.gif\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:label1\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data1\" content=\"1 minute\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\\\/\\\/schema.org\",\"@graph\":[{\"@type\":\"WebPage\",\"@id\":\"https:\\\/\\\/sciences.ucf.edu\\\/biology\\\/pascencio\\\/methods-in-experimental-ecology-ii\\\/\",\"url\":\"https:\\\/\\\/sciences.ucf.edu\\\/biology\\\/pascencio\\\/methods-in-experimental-ecology-ii\\\/\",\"name\":\"Methods in Experimental Ecology II - Modeling Ecological Dynamics in Anthropogenic and Natural Systems\",\"isPartOf\":{\"@id\":\"https:\\\/\\\/sciences.ucf.edu\\\/biology\\\/pascencio\\\/#website\"},\"primaryImageOfPage\":{\"@id\":\"https:\\\/\\\/sciences.ucf.edu\\\/biology\\\/pascencio\\\/methods-in-experimental-ecology-ii\\\/#primaryimage\"},\"image\":{\"@id\":\"https:\\\/\\\/sciences.ucf.edu\\\/biology\\\/pascencio\\\/methods-in-experimental-ecology-ii\\\/#primaryimage\"},\"thumbnailUrl\":\"https:\\\/\\\/sciences.ucf.edu\\\/biology\\\/pascencio\\\/wp-content\\\/uploads\\\/sites\\\/2\\\/sites\\\/24\\\/2016\\\/11\\\/pdf_logo.gif\",\"datePublished\":\"2016-11-07T19:02:52+00:00\",\"dateModified\":\"2017-01-10T16:36:32+00:00\",\"inLanguage\":\"en-US\",\"potentialAction\":[{\"@type\":\"ReadAction\",\"target\":[\"https:\\\/\\\/sciences.ucf.edu\\\/biology\\\/pascencio\\\/methods-in-experimental-ecology-ii\\\/\"]}]},{\"@type\":\"ImageObject\",\"inLanguage\":\"en-US\",\"@id\":\"https:\\\/\\\/sciences.ucf.edu\\\/biology\\\/pascencio\\\/methods-in-experimental-ecology-ii\\\/#primaryimage\",\"url\":\"https:\\\/\\\/sciences.ucf.edu\\\/biology\\\/pascencio\\\/wp-content\\\/uploads\\\/sites\\\/2\\\/sites\\\/24\\\/2016\\\/11\\\/pdf_logo.gif\",\"contentUrl\":\"https:\\\/\\\/sciences.ucf.edu\\\/biology\\\/pascencio\\\/wp-content\\\/uploads\\\/sites\\\/2\\\/sites\\\/24\\\/2016\\\/11\\\/pdf_logo.gif\"},{\"@type\":\"WebSite\",\"@id\":\"https:\\\/\\\/sciences.ucf.edu\\\/biology\\\/pascencio\\\/#website\",\"url\":\"https:\\\/\\\/sciences.ucf.edu\\\/biology\\\/pascencio\\\/\",\"name\":\"Modeling Ecological Dynamics in Anthropogenic and Natural Systems\",\"description\":\"UCF Department of Biology\",\"potentialAction\":[{\"@type\":\"SearchAction\",\"target\":{\"@type\":\"EntryPoint\",\"urlTemplate\":\"https:\\\/\\\/sciences.ucf.edu\\\/biology\\\/pascencio\\\/?s={search_term_string}\"},\"query-input\":{\"@type\":\"PropertyValueSpecification\",\"valueRequired\":true,\"valueName\":\"search_term_string\"}}],\"inLanguage\":\"en-US\"}]}<\/script>\n<!-- \/ Yoast SEO plugin. -->","yoast_head_json":{"title":"Methods in Experimental Ecology II - Modeling Ecological Dynamics in Anthropogenic and Natural Systems","robots":{"index":"index","follow":"follow","max-snippet":"max-snippet:-1","max-image-preview":"max-image-preview:large","max-video-preview":"max-video-preview:-1"},"canonical":"https:\/\/sciences.ucf.edu\/biology\/pascencio\/methods-in-experimental-ecology-ii\/","og_locale":"en_US","og_type":"article","og_title":"Methods in Experimental Ecology II - Modeling Ecological Dynamics in Anthropogenic and Natural Systems","og_description":"Topic PDFs Scripts & Data Exercises Class Presentation Syllabus (Fall 2016)) Schedule V2 Schedule V3 http:\/\/cran.r-project.org\/doc\/manuals\/R-intro.pdf Instructions (Fall 2016) Assumptions Assumptions demo Assumptions script Hypericum data Exercise 1 EX1 script Averages Averages demo Averages script Model 1 Model 2 Hypericum … Continue reading →","og_url":"https:\/\/sciences.ucf.edu\/biology\/pascencio\/methods-in-experimental-ecology-ii\/","og_site_name":"Modeling Ecological Dynamics in Anthropogenic and Natural Systems","article_modified_time":"2017-01-10T16:36:32+00:00","og_image":[{"url":"https:\/\/sciences.ucf.edu\/biology\/pascencio\/wp-content\/uploads\/sites\/2\/sites\/24\/2016\/11\/pdf_logo.gif","type":"","width":"","height":""}],"twitter_card":"summary_large_image","twitter_misc":{"Est. reading time":"1 minute"},"schema":{"@context":"https:\/\/schema.org","@graph":[{"@type":"WebPage","@id":"https:\/\/sciences.ucf.edu\/biology\/pascencio\/methods-in-experimental-ecology-ii\/","url":"https:\/\/sciences.ucf.edu\/biology\/pascencio\/methods-in-experimental-ecology-ii\/","name":"Methods in Experimental Ecology II - Modeling Ecological Dynamics in Anthropogenic and Natural Systems","isPartOf":{"@id":"https:\/\/sciences.ucf.edu\/biology\/pascencio\/#website"},"primaryImageOfPage":{"@id":"https:\/\/sciences.ucf.edu\/biology\/pascencio\/methods-in-experimental-ecology-ii\/#primaryimage"},"image":{"@id":"https:\/\/sciences.ucf.edu\/biology\/pascencio\/methods-in-experimental-ecology-ii\/#primaryimage"},"thumbnailUrl":"https:\/\/sciences.ucf.edu\/biology\/pascencio\/wp-content\/uploads\/sites\/2\/sites\/24\/2016\/11\/pdf_logo.gif","datePublished":"2016-11-07T19:02:52+00:00","dateModified":"2017-01-10T16:36:32+00:00","inLanguage":"en-US","potentialAction":[{"@type":"ReadAction","target":["https:\/\/sciences.ucf.edu\/biology\/pascencio\/methods-in-experimental-ecology-ii\/"]}]},{"@type":"ImageObject","inLanguage":"en-US","@id":"https:\/\/sciences.ucf.edu\/biology\/pascencio\/methods-in-experimental-ecology-ii\/#primaryimage","url":"https:\/\/sciences.ucf.edu\/biology\/pascencio\/wp-content\/uploads\/sites\/2\/sites\/24\/2016\/11\/pdf_logo.gif","contentUrl":"https:\/\/sciences.ucf.edu\/biology\/pascencio\/wp-content\/uploads\/sites\/2\/sites\/24\/2016\/11\/pdf_logo.gif"},{"@type":"WebSite","@id":"https:\/\/sciences.ucf.edu\/biology\/pascencio\/#website","url":"https:\/\/sciences.ucf.edu\/biology\/pascencio\/","name":"Modeling Ecological Dynamics in Anthropogenic and Natural Systems","description":"UCF Department of Biology","potentialAction":[{"@type":"SearchAction","target":{"@type":"EntryPoint","urlTemplate":"https:\/\/sciences.ucf.edu\/biology\/pascencio\/?s={search_term_string}"},"query-input":{"@type":"PropertyValueSpecification","valueRequired":true,"valueName":"search_term_string"}}],"inLanguage":"en-US"}]}},"_links":{"self":[{"href":"https:\/\/sciences.ucf.edu\/biology\/pascencio\/wp-json\/wp\/v2\/pages\/157","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/sciences.ucf.edu\/biology\/pascencio\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/sciences.ucf.edu\/biology\/pascencio\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/sciences.ucf.edu\/biology\/pascencio\/wp-json\/wp\/v2\/users\/3"}],"replies":[{"embeddable":true,"href":"https:\/\/sciences.ucf.edu\/biology\/pascencio\/wp-json\/wp\/v2\/comments?post=157"}],"version-history":[{"count":0,"href":"https:\/\/sciences.ucf.edu\/biology\/pascencio\/wp-json\/wp\/v2\/pages\/157\/revisions"}],"wp:attachment":[{"href":"https:\/\/sciences.ucf.edu\/biology\/pascencio\/wp-json\/wp\/v2\/media?parent=157"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}