Genomics & Bioinformatics Cluster, Dept. of Biology

Publications

View full CV here

Forsman, A.M., Gaither, M., Hoenig, B., A.E. Savage (2022). DNA metabarcoding across disciplines: sequencing our way to greater understanding across scales of biological organization. Integrative and Comparative Biology icac090. DOI: 10.1093/icb/icac090

Sarkis, C., Seney, E., Hoenig, B.D., Gaspar, S.A., A.M. Forsman (2022). Sea Snacks from DNA Tracks: Using DNA Metabarcoding to Characterize the Diet of Green Turtles (Chelonia Mydas). Integrative and Comparative Biology icac080. DOI: 10.1093/icb/icac080

Forsman, A.M., Hoenig, B.D., Gaspar, S.A., Fischer, J.D., Siegrist, J., and K. Fraser (2021). Evaluating the impacts of metabarcoding primer selection on DNA characterization of diet in an aerial insectivore, the Purple Martin. Ornithology 139:ukab075. DOI: 10.1093/ornithology/ukab075

Hoenig, B.D., Snider, A.M., Forsman, A.M., Hobson, K.A., Latta, S.C., Miller, E.T., Polito, M.J., Powell, L.L., Rogers, S.L., Sherry, T.W., Toews, D.P.L., Welch, A., Taylor, S.S., and B.A. Porter (2021). Current methods and future directions in avian diet analysis. Ornithology 139:ukab077. DOI: 10.1093/ornithology/ukab077

Faizo, N., Narasimhulu, C.A., Forsman, A.M., Yooseph, S., and Sampath Parthasarathy (2021) Effect of 13-Hydroperoxyoctadecadienoic Acid (13-HPODE) Treatment on the Transcriptomic Profile of Poorly-differentiated Caco-2 Cells. Applied Sciences 11:2678. DOI: 10.3390/app11062678.

 Faizo, N., Narasimhulu, C.A., Forsman, A.M., Yooseph, S., and Sampath Parthasarathy (2021) Peroxidized Linoleic Acid, 13-HPODE, Alters Gene Expression Profile in Intestinal Epithelial Cells. Foods 10(2):314. PMID: 33546321 DOI: 10.3390/foods10020314.

Shuman Goodier, M.E., Singleton, G.R., Forsman, A.M., Hines, S., Christodoulides, N., Daniels, K.D., and C.R. Propper (2021) Invasive cane toads, Rhinella marina: good for something? Developmental assays reveal safety concerns of a common rice herbicide, butachlor. Environmental Pollution 272:115955. PMID: 33221087. DOI: 10.1016/j.envpol.2020.115955.

Cole, A.L., Sundar, M., Lopez, A.M., Forsman, A.M, Yooseph, S., and A.M. Cole (2021) Identification of nasal gammaproteobacteria with potent activity against Staphylococcus aureus: novel insights into the “noncarrier” state. mSphere 6(1):e01015-20. PMID: 33408227. DOI: 10.1128/mSphere.01015-20.

Winkler, D., K. Hallinger, M. Andersen, D. Ardia, A. Belmaker, D. Chang van Oordt, V. Ferretti,  A. Forsman, J. Gaul, P. Llambías, S. Orzechowski, T. Pegan, J. Shipley, M. Stager, C. Taff, J. Uehling, M. Verhoeven, M. Vitousek, M. Wilson, and H.S. Yoon (2020) Full lifetime perspectives on the costs and benefits of lay date variation in tree swallows. Ecology 101: e03109. PMID: 32455498, DOI: 10.1002/ecy.3109

Thompson, L.R., Sanders, J.G., McDonald, D., Amir, A., Ladau, J., Locey, K.J., Prill, R.J., Tripathi, A., Gibbons, S.M., Ackermann, G., Navas-Molina, J.A., Janssen, S., Kopylova, E., Vázquez-Baeza, Y., González, A., Morton, J.T., Mirarab, S., Xu, Z.Z., Jiang, L., Haroon, M.F., Kanbar, J., Zhu, Q., Song, S.J., Kosciolek, T., Bokulich, N.A., Lefler, J., Brislawn. C.J., Humphrey, G., Owens, S.M., Hampton-Marcell, J., Berg-Lyons, D., McKenzie, V., Fierer, N., Fuhrman, J.A., Clauset, A., Stevens, R.L., Shade, A., Pollard, K.S., Goodwin, K.D., Jansson, J.K., Gilbert, J.A., Knight, R. & The Earth Microbiome Project Consortium (2017) A communal catalogue reveals Earth’s multiscale microbial diversity. Nature 551: 457-463. PMID: 29088705. DOI: 10.1038/nature24621.

Lebert, B.M., Sanford, S.A., Reisinger, L.M., Forsman, A.M., and A.E. Savage (2017) Draft Genome Sequence of Xenophilus sp., a Novel Bacterium Isolated from the Skin of a Southern Leopard Frog (Rana Sphenocephala) in Florida, USA. Genome Announcements 5: e01067-17. PMID: 28963224. DOI: 10.1128/genomeA.01067-17.

Bowers, E.K., Forsman, A.M., Masters, B.S., Johnson, B.G.P., Johnson, L.S., Sakaluk, S.K., and C.F. Thompson (2015) Increased extra-pair paternity in broods of aging males and enhanced recruitment of extra-pair young in a migratory bird. Evolution 69: 2533-2541. PMID: 26258950. DOI: 10.1111/evo.12746.

Sakaluk, S.K., Wilson, A.J., Bowers, E.K., Johnson, L.S., Masters, B.S., Johnson, B.G.P., Vogel, L.A., Forsman, A.M., and C.F. Thompson (2014) Genetic and environmental variation in condition, cutaneous immunity, and haematocrit in house wrens. BMC Evolutionary Biology 14. PMID: 25471117. DOI: 10.1186/s12862-014-0242-8.

Bowers, E.K., Hodges, C.J., Forsman, A.M., Vogel, L.A., Masters, B.S., Johnson, B.G.P., Johnson, L.S., Thompson, C.F., and S.K. Sakaluk (2014) Neonatal body condition, immune responsiveness, and hematocrit predict longevity in a wild bird population. Ecology 95: 3027-3034. PMID: 25505800. DOI: 10.1890/14-0418.1.

Thompson, C.F., Sakaluk, S.K., Masters, B.S., Johnson, B.G.P., Vogel, L.A., Forsman, A.M., and L.S. Johnson (2014) Condition-dependent sex difference in nestling House Wren (Troglodytes aedon) response to phytohaemagglutinin injection. Canadian Journal of Zoology 92: 1-7.

Forsman, A.M., Sakaluk, S.K., Thompson, C.F., and L.A. Vogel (2010) Cutaneous immune activity, but not innate immune responsiveness, covaries with mass and environment in nestling house wrens (Troglodytes aedon). Physiological and Biochemical Zoology 83: 512-518. PMID: 20230303. DOI: 10.1086/649894.

Forsman, A.M., Vogel, L.A., Sakaluk, S.K., Johnson, B.G., Masters, B.S., Johnson, L.S., and C.F. Thompson (2008) Female house wrens (Troglodytes aedon) increase the size, but not immunocompetence, of their offspring through extra-pair mating. Molecular Ecology 17: 3697-3706. PMID: 18662223. DOI: 10.1111/j.1365-294X.2008.03860.x.

Forsman, A.M., Vogel, L.A., Sakaluk, S.K., Grindstaff, J.L., and C.F. Thompson (2008) Immune-challenged house wren broods differ in the relative strengths of their responses among different axes of the immune system. Journal of Evolutionary Biology 21: 873-878. PMID: 18298497. DOI: 10.1111/j.1420-9101.2008.01503.x.