|
Topic
|
PDFs
|
Data & Scripts
|
|
|
| Introduction |
 Syllabus (August, 2013)
|
|
|
 |
 |
|
|
http://cran.r-project.org/doc/manuals/R-intro.pdf
|
Instructions for exercises
|
|
Introduction to Probability
|
|
|
Exercise 1a
|
|
| Random variables and Probability distributions |
Probability distributions – R demo (1)
Ellison and Dennis 2010 (1)
|
|
Exercise 1b
|
 |
| Managing and curating data |
Managing and curating data – R demo (2)
Burgman 2011 (2)
Metadata Hypericum cumulicola
|
 Hypericum cumulicola |
Exercise 2
|
 |
| Experimental design |
|
|
|
 |
| Summary Statistics and sampling |
Law Large Numbers – R demo (3)
Analysis of Averages – R demo (3)
Hurlbert 1984 (3)
|
Hypericum cumulicola height
Hypericum cumulicola population level
|
law large numbers
Central limit theorem
Analysis of Averages
Exercise 3
|
 |
| Statistical models |
|
|
|
 |
| Confidence intervals |
Confidence intervals – R demo (4)
Fidler et al 2006 (4)
|
|
Confidence intervals
Exercise 4
|
|
| Three Frameworks for Statistical Analysis |
Three frameworks- R demo (5)
Crowley 1992 (5)
|
Ant_Nests
Ant Nest Data.txt
|
Exercise 5
Data for exercise 5
|
 |
| Simple linear Regression |
Regression – R demo (6)
Ellison 2004 (6)
|
Regression.R
Regression_data
|
Exercise 6
Data for exercise 6
|
 |
| Transformations |
|
|
|
 |
| Useful properties of the normal distribution |
Normal distribution
|
t-distribution in R
F-distribution in R
|
|
 |
| Exam 1 |
Exam 1 Questions
|
Birds
Saxifraga
|
Return Date:
October 9 @ 3:00 PM
|
 |
| Multiple Regression |
Multiple regression – R demo (7)
Stephens et al 2007 (7)
|
multiple regression R
Data regression
|
Exercise 7
|
 |
|
Model selection
|
Model Selection – R demo (8)
Johnson & Omland 2008 (8)
|
Snake data
Snake dat.txt
|
Linear vs. polynomial
Exercise 8
Data for Exercise 8
|
 |
| Bibliography model selection |
Arnod 2010 Doherty et al 2010 Hutto 2012 Lukacs et al 2010
Lukacs et al 2007 Burham & Anderson 2004 Plowright et al 2008 Stamps et al 2005
|
| General linear models (ANOVA) |
General linear models – R demo (9)
Bolker et al 2008 (9)
|
ANOVA scrip
ANOVA data
|
Exercise 9
Data for Exercise 9
|
 |
| Nested and Block designs |
ANOVA block/nested – R demo
|
ANOVA block/nested script
ANOVA block data
ANOVA nested data
|
Exercise X
Data for Exercise
Data for Exercise
|
 |
| Factorial designs |
ANOVA factorial – R demo
|
ANOVA factorial
ANOVA data for R factorial design
ANOVA excell factorial data
|
Exercise Y
Data for Exercise
|
 |
| General linear models (ANCOVA)
|
ANCOVA – R demo (10)
Hoenig and Heisey 2001 (10)
|
Ancova script
Ancova data
|
Exercise 10
Data for Exercise 10
|
 |
|
Regression of counts
(Non-normal errors)
|
|
Snakes script
Snakes data
Mantis script
Mantis data |
|
 |
| Multiple Comparisons |
Day and Quinn 1989 (11)
Dunnett table
|
Multiple comparisons – R demo (11)
Multiple comparisons data
|
Exercise 11
Data for Exercise 11
|
 |
| Logistic Regression |
Logistic Regression – R demo (12)
the logit transformation
Colegrave and Ruxtom 2002 (12)
|
Logistic Regression – R demo (12)
Hypericum survival
|
Exercise 12
Data for Exercise 12
|
 |
| Analysis of Categorical Data |
Categorical analysis – R demo (13)
Johnson 1999, 2005 (13)
|
Analysis of categorical data
Bayesian – loglinear
Sinclair
|
Exercise 13
Data for Exercise 13
|
 |
| Final Exam |
Final Exam |
Wiregrass |
Return Date:
December 6 @ 11:59 PM
|
 |
|
|
|
|
Thanks for the opportunity of sharing ideas with you!
|
 |
